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ERX4260204: Illumina HiSeq 4000 sequencing; qiita_ptid_7604:11442.G83407
1 ILLUMINA (Illumina HiSeq 4000) run: 17,778 spots, 2.7M bases, 1.3Mb downloads

Design: food microbiome
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: Global FoodOmics Project
show Abstracthide Abstract
We've all heard the old adage you are what you eat-but, do we know what we eat? There is much we don't yet know about the precise composition of the foods we eat; for example, which different molecules and microbes are found in or on different foods? How does the manner in which you prepare the foods change the molecules that are present? How much do organic foods differ from all natural or conventionally grown foods? The Global FoodOmics project will address these questions, and many more. The Global FoodOmics project will characterize the molecules and microbes present on a diverse set of foods and beverage- from fruits, vegetables, spices, to complex foods, exotic animal feed, pet food and more. Other categories that will be represented are fermented foods such as yogurt, pickled vegetables and beverages including beer, wine, kombucha as well as sodas and juices.
Sample: 11442.G83407
SAMEA7032490 • ERS4796690 • All experiments • All runs
Organism: food metagenome
Library:
Name: 11442.G83407
Instrument: Illumina HiSeq 4000
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4
Experiment attributes: (show all 29 attributes...) (hide...)
barcode: CTGATGTACACG
center_name: UCSDMI
center_project_name: Julia GF
extraction_robot: Carmen_HOWE_KF2
extractionkit_lot: 157024518
linker: GT
mastermix_lot: 549676_556996
orig_name: 83407
pcr_primers: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT
plating: LDG
primer: GTGTGYCAGCMGCCGCGGTAA
primer_date: 122817
primer_plate: 3
processing_robot: JERE
project_name: Julia Global Food Project
run_center: UCSDMI
run_date: 8/23/19
run_prefix: Undetermined_S0_L003
runid: 190823_K00180_0886_AH7HHLBBXY_RKL_0024_Global_Food (show full text...)(hide...)
190823_K00180_0886_AH7HHLBBXY_RKL_0024_Global_Food_Mayo_Stability_Gerwick_Spikein
sample_plate: Julia_Global_Food_Project_Plate_21
sequencing_meth: Sequencing by synthesis
target_gene: 16S rRNA
target_subfragment: V4
tm1000_8_tool: 311172B
tm300_8_tool: 109375A
tm50_8_tool: 311411B
water_lot: RNBF9925
well_description: Julia_Global_Food_Project_Plate_21_83407_C3
well_id: C3
Runs: 1 run, 17,778 spots, 2.7M bases, 1.3Mb
Run# of Spots# of BasesSizePublished
ERR431156117,7782.7M1.3Mb2020-07-03

ID:
11277000

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